| count_genomic_features_in_a_genome_graph | Count genomic features in a genome graph. |
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Action options:
-g, --graph <graph>
A value of type string (iri) that will substitute ?_graph_iri in the original query
Required: yes
Permitted values: http://plants.ensembl.org/Solanum_lycopersicum, http://plants.ensembl.org/Solanum_tuberosum, http://solgenomics.net/genome/Solanum_lycopersicum, http://solgenomics.net/genome/Solanum_pennellii, http://solgenomics.net/genome/Solanum_tuberosum
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
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| get_annotations_from_sgn,_ensembl_and_uniprot_given_a_gene_id | Get annotations from SGN, Ensembl and UniProt given a gene ID. |
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Action options:
-g, --geneid <geneid>
A value of type string that will substitute ?_geneid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
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| get_genes_that_overlap_with_a_qtl_identified_by_id | Get genes that overlap with a QTL identified by ID. |
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Action options:
-q, --qtlid <qtlid>
A value of type string that will substitute ?_qtlid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-s, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_genomic_features_given_an_interval | Get genomic features given an interval. |
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Action options:
-b, --begin <begin>
A value of type string that will substitute ?_begin_xsd_integer in the original query
Required: yes
-g, --graph <graph>
A value of type string (iri) that will substitute ?_graph_iri in the original query
Required: yes
Permitted values: http://solgenomics.net/genome/Solanum_lycopersicum, http://solgenomics.net/genome/Solanum_pennellii, http://solgenomics.net/genome/Solanum_tuberosum
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-f, --feature <feature>
A value of type string that will substitute ?_feature_xsd_string in the original query
Required: yes
-c, --chrom <chrom>
A value of type string that will substitute ?_chrom_xsd_string in the original query
Required: yes
-h, --end <end>
A value of type string that will substitute ?_end_xsd_integer in the original query
Required: yes
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_orthologs_of_a_gene_identified_by_id | Get orthologs of a gene identified by ID. |
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Action options:
-g, --geneid <geneid>
A value of type string that will substitute ?_geneid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
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| get_paralogs_of_a_gene_identified_by_id | Get paralogs of a gene identified by ID. |
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Action options:
-g, --geneid <geneid>
A value of type string that will substitute ?_geneid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_qtls_associated_with_a_trait_identified_by_id | Get QTLs associated with a trait identified by ID. |
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Action options:
-t, --traitid <traitid>
A value of type string that will substitute ?_traitid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_qtls_described_in_an_article_identified_by_id | Get QTLs described in an article identified by ID. |
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Action options:
-p, --pmcid <pmcid>
A value of type string that will substitute ?_pmcid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_term_id(s)_for_a_trait_defined_in_several_trait_ontologies | Get term ID(s) for a trait defined in several trait ontologies. |
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Action options:
-t, --trait <trait>
A value of type string that will substitute ?_trait in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| get_the_genomic_location_of_a_feature_identified_by_id_(e.g.,_gene,_exonorintron,_transcript_or_marker) | Get the genomic location of a feature identified by ID (e... |
|
Action options:
-f, --featureid <featureid>
A value of type string that will substitute ?_featureid in the original query
Required: yes
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
|
| summarize_qtls_extracted_from_articles | Summarize QTLs extracted from articles. |
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Action options:
-e, --endpoint [endpoint]
Alternative endpoint for SPARQL query
Required: no
-u, --url_only [url_only]
Return only the action URL, not the action results
Required: no
-r, --response_format [response_format]
Sets the response media type through an Accept header.
Required: no
Permitted values: application/json, text/csv, text/html
-q, --quality_values [quality_values]
Quality value string. e.g. application/json;q=1.0,text/turtle;q=0.8,*/*;q=0.5.
--response_format takes precedence.
Required: no
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OSDB Service Actions